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None Pdb file for pdb4dna 

Forum: DNA/Very Low Energy
Date: 02 Apr, 2018
From: Joăo Júlio <Joăo Júlio>


I've been trying to import a pdb file from a genomic sequence from a bacteria that i have generated myself using a software named Avogrado but when I try to load it on pdb4dna I get this message:

/PDB4DNA/det/loadPDB RecA.pdb Load PDB file : RecA.pdb.

G4Material WARNING: duplicate name of material Galactic PDBlib::load >> No header found !!!! **************** atomisticView(...) **************** Number of loaded chains = 0 Number of Atoms = 0 Number of Hydrogens = 0 Number of Carbons = 0 Number of Oxygens = 0 Number of Nitrogens = 0 Number of Sulfurs = 0 Number of Phosphorus = 0 Number of undifined atoms =0

-------- EEEE ------- G4Exception-START -------- EEEE -------
*** G4Exception : GeomSolids0002
      issued by : G4Box::G4Box()
Dimensions too small for Solid: Bounding!
     hX, hY, hZ = -inf, -inf, -inf
*** Fatal Exception *** core dump ***
-------- EEEE -------- G4Exception-END --------- EEEE -------

*** G4Exception: Aborting execution *** Abortado (imagem do núcleo gravada)

How can I fix this problem? Thanks

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