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Forum: Medical Applications
Re: None About simulation in PDB4DNA using HepRepFile (Felix Rodrigues Gulias)
Re: None Re: About simulation in PDB4DNA using HepRepFile (Joseph Perl)
Date: 03 Oct, 2017
From: Felix Rodrigues Gulias <Felix Rodrigues Gulias>

Dear Joseph Pearl

Thank you for the interest.

I adopted your suggestion: java -jar -mx2000M HepRApp.jar

Really the error message disappeared, but the image are not produced. Only one yellow dot is present (View the images send that are attached to this message). I used only 10 events for /run/beamOn.

View the some messages in the terminal for java -jar HepRApp.jar during the execution:

Low on memory. Omitting representation of [TreeNode: Trajectories] Low on memory. Omitting representation of [TreeNode: Event Data] Low on memory. Omitting representation of [TreeNode: /home/felixgulias/geant4/dodna/pdbdna/G4Data0.heprep] Low on memory. Omitting representation of [TreeNode: Root]

View the some messages in the terminal for java -jar -mx2000M HepRApp.jar during the execution:

[felixgulias@localhost ~]$ java -jar -mx2000M HepRApp.jar Desktop:addImpl:found internalFrames to be null. Will instantiate new copy of internalFrames and proceed. Desktop:addImpl:found internalFrames to be null. Will instantiate new copy of internalFrames and proceed. => execution finalized here

HepRepFile has 93.2 MB (size). For me the problem was the HepRApp. Will be that HepRepFile is not appropiated for pdb4dna ?

Attachment:
      http://hypernews.slac.stanford.edu/HyperNews/geant4/get/AUX/2017/10/03/16.58-60973-t1.png
      http://hypernews.slac.stanford.edu/HyperNews/geant4/get/AUX/2017/10/03/16.58-78111-t2.png
      http://hypernews.slac.stanford.edu/HyperNews/geant4/get/AUX/2017/10/03/16.58-41969-t3.png
      http://hypernews.slac.stanford.edu/HyperNews/geant4/get/AUX/2017/10/03/16.58-68863-t4.png

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1 None: Re: About simulation in PDB4DNA using HepRepFile   (Joseph Perl - 04 Oct, 2017)
(_ None: Re: About simulation in PDB4DNA using HepRepFile   (Joseph Perl - 04 Oct, 2017)
(_ None: Re: About simulation in PDB4DNA using HepRepFile   (Felix Rodrigues Gulias - 05 Oct, 2017)
(_ None: Re: About simulation in PDB4DNA using HepRepFile   (Joseph Perl - 06 Oct, 2017)
(_ None: Re: About simulation in PDB4DNA using HepRepFile   (Felix Rodrigues Gulias - 09 Oct, 2017)
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